SUBPAGE MENU
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fsl_build_osx
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Darwin Kernel Version 15.6.0: Thu Jun 23 18:25:34 PDT 2016; root:xnu-3248.60.10~1/RELEASE_X86_64
10.11.6
16_09_28
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How to build fsl from source on OS X:
Basic information can be found at:
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/SourceCode
It is recommended by me that you create directory at your home folder (as described in the link above):
command:
Then move downloaded tar file with the source code into newly created directory and untar it.
command:
command:
command:
Set the main FSL environment variables (for version 5.0.6 and above you first need to uncomment the lines related to FSLCONFDIR and FSLMACHTYPE in $FSLDIR/etc/fslconf/fsl.sh):
command:
command:
After the modifications run fsl.sh - FSL's configuration file
command:
Check if the compiler machine has been automatically detected.
If the above directory does not exist (the ls returns an error).
Check your machine/compiler version:
command:
Select the closest match from the directories in $FSLDIR/config and do the following (e.g. for apple-darwin13-llvm5.1):
command:
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# TROUBLESHOOTING:
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!!ERROR in BUILD!!
Could not make the following projects successfully:
fslsurface film ptx2
SOLUTION:
You have to edit Makefile of the fslsurface. In newer versions of OS X different graphical libraries has to be used:
command:
Change (line 10):
to
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# SOFTWARE VERSION INFO:
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command:
output:
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example_output
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Troubleshooting:
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Sources:
example_source_title
example_source_link
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